The pressure, intensity, heating rate, temperature, and thermal dose fields are computed, plotted, the output is released to the MATLAB workspace for further user analysis or postprocessing. The package (HIFU_Simulator) consists of a propagation module which solves the Khokhlov-Zabolotskaya-Kuznetsov (KZK) equation and a heating module which solves Pennes' bioheat transfer (BHT) equation. People who are unfamiliar with the Matlab language will have little difficult navigating the user-friendly interface, and users with Matlab programming experience can adapt and customize MSiReader for their own needs.Ī User-Friendly Software Package for HIFU SimulationĪ freely-distributed, MATLAB (The Mathworks, Inc., Natick, MA)-based software package for simulating axisymmetric high-intensity focused ultrasound (HIFU) beams and their heating effects is discussed. The application is built on the Matlab platform ( Mathworks, Natick, MA, USA) and includes a large selection of data analysis tools and features. We introduce here MSiReader, a free open source application to read and analyze high resolution MSI data from the most common MSi data formats. However, few free software packages to read and analyze files of these different formats are readily available. As a result, there important varieties of data file formats used to store mass spectrometry imaging data and, concurrent to the development of MSi, collaborative efforts have been undertaken to introduce common imaging data file formats. However, the technology is not mature and multiple research groups in both academia and industry are still very actively studying the fundamentals of imaging techniques, adapting the technology to new ionization sources, and developing new applications. Robichaud, Guillaume Garrard, Kenneth P Barry, Jeremy A Muddiman, David Cĭuring the past decade, the field of mass spectrometry imaging (MSI) has greatly evolved, to a point where it has now been fully integrated by most vendors as an optional or dedicated platform that can be purchased with their instruments. MSiReader: an open-source interface to view and analyze high resolving power MS imaging files on Matlab platform. The chlorophyll a data were downloaded from the NASA website. The globe and the inset map were generated with the M_Map package for Matlab (version 7.12.0.635 MathWorks, Natick, MA). Microbial community response during the iron fertilization experiment LOHAFEXĭigital Repository Service at National Institute of Oceanography (India) It is used heavily in education, research, and industry, for solving general, as well as application area-specific problems, that arise in various disciplines. Matlab® is a program for numeric computation, simulation and visualization, developed by The Mathworks, Inc. Römer, Gerardus Richardus, Bernardus, Engelina Huis in 't Veld, Bert Schmidt, M.
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